PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.V6ZMF
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 405aa    MW: 43265.2 Da    PI: 6.0344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.V6ZMFgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.4e-12225270555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Aradu.V6ZMF 225 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 270
                  99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-17218280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-13218274No hitNo description
PROSITE profilePS5088817.39220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16222279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9225270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MQPCSREMQS LNSLFNNQQQ IQMDPATSQE DDFIKQMLST IPPPPPPSWN LDHTPPNPKP  60
YWLDNDNVAF PNYDDPSTLA SKFRNHQITA TSSSKAAAAA LLLQQQLLMT RGLSGADSAI  120
LHHMFDSSQN DVVDASSSSF KSPNPSSADG SVQALYDGFT GSLQGAALAS NQTHHFQHPQ  180
VQTSSNPNQM QGQGQGTSQG GNPNPNPGQP KQRVRARRGQ ATDPHSIAER LRRERIAERM  240
KALQELVPNA NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGAAAVAPL VADINSEGGG  300
DCVQTNGNQT AGASSSNDSL TMTEQQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST  360
ATATCHPRNP IMNPTDGPSS PGMSVLTVQS ANGDAVKDAT SVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229234RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015932806.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG97e-88BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0S3RH891e-165A0A0S3RH89_PHAAN; Uncharacterized protein
STRINGGLYMA09G14380.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.19e-61LJRHL1-like 1